Advanced bioinformatics and genomics

  • Teaching

    Details

    Faculty Faculty of Science and Medicine
    Domain Biochemistry
    Code UE-SBC.07005
    Languages English
    Type of lesson Lecture
    Exercise
    Level Bachelor
    Semester SA-2022

    Title

    French Bioinformatique et génomique avancées
    German Fortgeschrittene Bioinformatik und Genomik
    English Advanced bioinformatics and genomics

    Schedules and rooms

    Summary schedule Friday , Cours bloc (Autumn semester)
    Struct. of the schedule weekly lecture 16 hours + exercises 16 hours
    Contact's hours 32

    Teaching

    Responsibles
    Teachers
    Description

    This class is a direct follow up of the basic class SBC.07004. It goes deeper in the Next Generation Sequencing applications methods, like de novo genome and transcriptome assembly & annotation, remapping & variants identification, transcriptomics, ChIPseq & related methods, epigenomics, microbiome & metagenomics, population genomics.

     

    Each week one main concept is detailed, explaining the algorithms of the most important methods with a particular look at their advantages and drawbacks. Each week practical exercises directly connected to the theoretical lectures are used to strengthen the learning by leveraging on simple web tools whenever possible.

     

    Comments

    Prérequis: SBC.07004
    Attention: ne peut pas être pris conjointement à SBC.07003

    La présence aux sessions d'exercices est recommandée.

    Softskills
    No
    Off field
    Yes
    BeNeFri
    Yes
    Mobility
    Yes
    UniPop
    No
  • Dates and rooms
    Date Hour Type of lesson Place
    04.11.2022 13:15 - 15:00 Cours PER 21, Room E140
    08.11.2022 10:15 - 12:00 Cours PER 21, Room C140
    11.11.2022 13:15 - 15:00 Cours PER 21, Room E140
    18.11.2022 13:15 - 15:00 Cours PER 21, Room E140
    22.11.2022 10:15 - 12:00 Cours PER 21, Room C140
    25.11.2022 13:15 - 15:00 Cours PER 21, Room E140
    29.11.2022 10:15 - 12:00 Cours PER 21, Room C140
    02.12.2022 13:15 - 15:00 Cours PER 21, Room E140
    06.12.2022 10:15 - 12:00 Cours PER 21, Room C140
    09.12.2022 13:15 - 15:00 Cours PER 21, Room E140
    13.12.2022 10:15 - 12:00 Cours PER 21, Room C140
    16.12.2022 13:15 - 15:00 Cours PER 21, Room E140
    23.12.2022 13:15 - 15:00 Cours PER 21, Room E140
  • Assessments methods

    Written exam - SA-2022, Session d'hiver 2023

    Date 16.02.2023 08:15 - 08:45
    Assessments methods By rating
    Descriptions of Exams

    Epreuve écrite (30 minutes). Une note est attribuée.

  • Assignment
    Valid for the following curricula:
    Additional Courses in Sciences
    Version: ens_compl_sciences
    Paquet indépendant des branches > Advanced courses in Biochemistry (Bachelor level)

    Additional Programme Requirements to the MSc in Bioinformatics and Computational Biology [MA]
    Version: 2022_1/V_01
    Additional Programme Requirements to the MSc Bioinformatics and Computational Biology > Advanced courses in Biochemistry (Bachelor level)

    Additional Programme Requirements to the MSc in Biology [MA]
    Version: 2022_1/V_01
    Supplement to the MSc in Biology > Advanced courses in Biochemistry (Bachelor level)

    Biochemistry [3e cycle]
    Version: 2015_1/V_01
    Continuing education > Advanced courses in Biochemistry (Bachelor level)

    Biochemistry [POST-DOC]
    Version: 2015_1/V_01
    Continuing education > Advanced courses in Biochemistry (Bachelor level)

    Biology - from genes to ecosystems 30
    Version: 2022_1/V_01
    Minor in Biology - from genes to ecosystems 30 > Biology - from genes to ecosystems, Minor 30 ECTS, elective courses (from 2022 on)

    Medical and molecular life sciences 30
    Version: 2022_1/V_01
    Minor in Medical and molecular life sciences 30 > Medical and molecular life sciences, Minor 30 ECTS, elective courses (from 2022 on)

    Pre-Master-Programme to the MSc in Bioinformatics and Computational Biology [PRE-MA]
    Version: 2022_1/V_01
    Prerequisite to the MSc in Bioinformtics and Computational Biology > Advanced courses in Biochemistry (Bachelor level)

    Pre-Master-Programme to the MSc in Biology [PRE-MA]
    Version: 2022_1/V_01
    Prerequisite to the MSc in Biology > Advanced courses in Biochemistry (Bachelor level)