Basic bioinformatics and genomics

  • Teaching

    Details

    Faculty Faculty of Science and Medicine
    Domain Biochemistry
    Code UE-SBC.07004
    Languages English
    Type of lesson Lecture
    Exercise
    Level Bachelor
    Semester SA-2022

    Title

    French Bioinformatique et génomique de base
    German Grundlagen der Bioinformatik und Genomik
    English Basic bioinformatics and genomics

    Schedules and rooms

    Summary schedule Friday , Cours bloc (Autumn semester)
    Struct. of the schedule weekly lecture 12 hours + exercises 12h
    Contact's hours 24

    Teaching

    Responsibles
    Teachers
    Description

    Knowledge of the basics on the origins and manipulations of biological sequence data is a must for any biomedical researcher. This class is oriented towards two main directions. First it introduces the basic concepts of DNA and protein sequences databases and analysis using bioinformatics tools (pairwise alignments, dotplots, multiple sequence alignments, searching databases with sequences, sequences motifs or Hidden Markov models). Secondly it introduces genomics concepts like the sequencing technologies, the human genome project, and the genome browsers. Each week one main concept is detailed, explaining the algorithms of the most important methods with a particular look at their advantages and drawbacks. Each week practical exercises directly connected to the theoretical lectures are used to strengthen the learning by leveraging on simple web tools.

    Comments

    Attention: ne peut pas être pris conjointement à SBC.07003

    La présence aux sessions d'exercices est recommandée.

    Softskills
    No
    Off field
    Yes
    BeNeFri
    Yes
    Mobility
    Yes
    UniPop
    No
  • Dates and rooms
    Date Hour Type of lesson Place
    23.09.2022 10:15 - 12:00 Cours PER 21, Room E140
    23.09.2022 13:15 - 15:00 Cours PER 21, Room E140
    27.09.2022 10:15 - 12:00 Cours PER 21, Room C140
    30.09.2022 13:15 - 15:00 Cours PER 21, Room E140
    04.10.2022 10:15 - 12:00 Cours PER 21, Room C140
    07.10.2022 13:15 - 15:00 Cours PER 21, Room E140
    11.10.2022 10:15 - 12:00 Cours PER 21, Room C140
    14.10.2022 13:15 - 15:00 Cours PER 21, Room E140
    18.10.2022 10:15 - 12:00 Cours PER 21, Room C140
    21.10.2022 13:15 - 15:00 Cours PER 21, Room E140
    25.10.2022 10:15 - 12:00 Cours PER 21, Room C140
    28.10.2022 13:15 - 15:00 Cours PER 21, Room E140
  • Assessments methods

    Written exam - SA-2022, Session d'hiver 2023

    Date 16.02.2023 08:15 - 08:45
    Assessments methods By rating
    Descriptions of Exams

    Epreuve écrite (30 minutes). Une note est attribuée.

  • Assignment
    Valid for the following curricula:
    Additional Courses in Sciences
    Version: ens_compl_sciences
    Paquet indépendant des branches > Advanced courses in Biochemistry (Bachelor level)

    Additional Programme Requirements to the MSc in Bioinformatics and Computational Biology [MA]
    Version: 2022_1/V_01
    Additional Programme Requirements to the MSc Bioinformatics and Computational Biology > Advanced courses in Biochemistry (Bachelor level)

    Additional Programme Requirements to the MSc in Biology [MA]
    Version: 2022_1/V_01
    Supplement to the MSc in Biology > Advanced courses in Biochemistry (Bachelor level)

    Biochemistry [3e cycle]
    Version: 2015_1/V_01
    Continuing education > Advanced courses in Biochemistry (Bachelor level)

    Biochemistry [POST-DOC]
    Version: 2015_1/V_01
    Continuing education > Advanced courses in Biochemistry (Bachelor level)

    Biology 120
    Version: 2022_1/V_01
    BSc in Biology, Major, 2nd-3rd year > BSc in Biology, Major, 2nd-3rd year (from AS2022 on)

    Pre-Master-Programme to the MSc in Bioinformatics and Computational Biology [PRE-MA]
    Version: 2022_1/V_01
    Prerequisite to the MSc in Bioinformtics and Computational Biology > Advanced courses in Biochemistry (Bachelor level)

    Pre-Master-Programme to the MSc in Biology [PRE-MA]
    Version: 2022_1/V_01
    Prerequisite to the MSc in Biology > Advanced courses in Biochemistry (Bachelor level)